{"id":408,"date":"2018-09-13T16:22:19","date_gmt":"2018-09-13T16:22:19","guid":{"rendered":"http:\/\/komiveslab.ucsd.edu\/?page_id=408"},"modified":"2021-07-07T01:01:09","modified_gmt":"2021-07-07T01:01:09","slug":"mass-spectrometry-publications","status":"publish","type":"page","link":"https:\/\/komiveslab.ucsd.edu\/?page_id=408","title":{"rendered":"Mass Spectrometry Publications"},"content":{"rendered":"

<\/a><\/p>\n

Mass Spectrometry<\/a><\/h1>\n

Engen JR and Komives EA<\/strong>, (2020) Complementarity of Hydrogen\/Deuterium Exchange Mass Spectrometry and Cryo-Electron Microscopy.<\/a> Trends Biochem Sci<\/em>. S0968-0004(20)30125-0.<\/p>\n

Kopcho N, Chang G, Komives EA<\/strong>. (2019) Dynamics of ABC Transporter P-glycoprotein in Three Conformational States.<\/a> Sci Rep<\/em>. 9(1):15092.<\/p>\n

Lumpkin RJ, Komives EA<\/strong>. (2019) DECA, A Comprehensive, Automatic Post-processing Program for HDX-MS Data<\/a>. Mol Cell Proteomics<\/em>. 18, 2516-2523.<\/p>\n

Lumpkin RJ, Gu H, Zhu Y, et al. Site-specific identification and quantitation of endogenous SUMO modifications under native conditions. <\/a> (2017) Nat Commun. 2017;8(1):1171.<\/p>\n

Ram\u00edrez-Sarmiento CA, Baez M, Zamora RA, Balasubramaniam D, Babul J, Komives EA, Guix\u00e9 V. (2015) The folding unit of phosphofructokinase-2 as defined by the biophysical properties of a monomeric mutant. <\/a>Biophys J 108(9):2350-61<\/p>\n

Meyer JG, Kim S, Maltby DA, Ghassemian M, Bandeira N, Komives EA. (2014) Expanding proteome coverage with orthogonal-specificity \u03b1-lytic proteases.<\/a> Mol Cell Proteomics 13(3):823-35.<\/p>\n

Ramirez-Sarmiento C, Baez M, Wilson CAM, Babul J, Komives EA, Guix\u00e9 V. (2013) Observation of solvent penetration during cold denaturation of E. coli phosphofructokinase-2. <\/a>Biophys J 104, 2254-2263.<\/p>\n

Balasubramaniam D, Komives EA. (2012) Hydrogen-exchange mass spectrometry for the study of intrinsic disorder in proteins. <\/a>Biochim Biophys Acta. doi:pii: S1570-9639(12)00250-6. 10.1016\/j.bbapap.2012.10.009. PMC3600394<\/p>\n

Meyer JG, Komives EA. (2012) Charge state coalescence during electrospray ionization improves peptide identification by tandem mass spectrometry. <\/a>J Am Soc Mass Spec 23, 1390-1399. doi: 10.1007\/s13361-012-0404-0.<\/p>\n

Craig PO, L\u00e4tzer J, Weinkam P, Hoffman RM, Ferreiro DU, Komives EA, Wolynes PG. (2011) Prediction of native-state hydrogen exchange from perfectly funneled energy landscapes. <\/a>J Am Chem Soc. 133(43):17463-72. PMC3203634<\/p>\n

Gertsman, I., Fu, C., Huang, R., Komives, E. A., Johnson, J. E. (2010) Critical salt bridges guide capsid assembly, stability, and maturation behavior in Bacteriophage HK97. <\/a>Mol Cell Proteomics 9, 1752-63. PMC2938056.<\/p>\n

Gertsman, I., Komives, E. A., Johnson, J. E. (2010) HK97 Maturation Studied by Crystallography and H\/(2)H Exchange Reveals the Structural Basis for Exothermic Particle Transitions.<\/a> J Mol Biol. 397, 560-574. PMC2938056.<\/p>\n

Gertsman, I., Gan, L., Guttman, M., Lee, K., Duda, R. L., Hendrix, R. W., Komives, E. A., Johnson, J. E. (2009)An unexpected twist in viral capsid maturation<\/a> Nature 458, 646-50.PMC2765791<\/p>\n

Anand, G. S., Hotchko, M., Brown, S. H., Ten Eyck, L. F., Komives, E. A. and Taylor, S. S. (2007) R-subunit Isoform Specificity in Protein Kinase A: Distinct Features of Protein Interfaces in PKA Types I and II by Amide H\/(2)H Exchange Mass Spectrometry.<\/a> J Mol Biol. 374, 487-99.<\/p>\n

Truhlar, S. M. E., Croy, C. H., Torpey, J. W., Koeppe, J. R. & Komives, E. A. (2006) Solvent Accessibility of Protein Surfaces by Amide H\/2H Exchange MALDI-TOF Mass Spectrometry.<\/a> J. Am. Soc. Mass Spectrom. 17, 1490 – 97.<\/p>\n

Hotchko, M., Anand, G., Komives, E. A., & Ten Eyck, L. (2006) Automated extraction of backbone deuteration levels from amide H\/2H exchange mass spectrometry experiments<\/a> Protein Science 15, 583 – 601.<\/p>\n

Komives, E. A.(2005) Protein-protein interaction dynamics by amide H\/2H exchange mass spectrometry<\/a>International Journal of Mass Spectrometry 240, 285-290.<\/p>\n

Anand, G. S., Law, D., Mandell, J. G., Snead, A. N., Tsigelny, I., Taylor, S. S., Ten Eyck, L., & Komives, E. A. (2003) Identification of the Protein Kinase A Regulatory RI -Catalytic Subunit Interface by Amide H\/2H Exchange and Protein Docking<\/a> Proc. Nat. Acad. Sci. U. S. A. 100, 13264-13269.<\/p>\n

Anand, G. S., Hughes, C. A., Jones, J. M., Taylor, S. S. & Komives, E. A. (2002) Amide H\/2H exchange reveals communication between the cAMP- and catalytic subunit-binding sites in the regulatory subunit of protein kinase A.<\/a> J. Mol. Biol. 323, 377-386.<\/p>\n

Baerga-Ortiz, A; Hughes, CA; Mandell, JG; Komives, EA. (2002) Epitope mapping of a monoclonal antibody against human thrombin by H\/D exchange mass spectrometry reveals selection of a diverse sequence in a highly conserved protein.<\/a> Protein Sci 11, 1300-1308.<\/p>\n

Hughes, C. A., Mandell, J. G., Anand, G. S., Stock, A. M. & Komives, E. A. (2001) Phosphorylation Causes Subtle Changes in Solvent Accessibility at the Interdomain Interface of Methylesterase CheB<\/a> J. Mol. Biol. 307, 967-976.<\/p>\n

Mandell, JG; Baerga-Ortiz, Komives, EA.(2001) Solvent accessibility of the thrombin-thrombomodulin interface.<\/a>J. Mol. Biol. 306: 575-589.<\/p>\n

Mandell, JG; Falick, AM; Komives, EA. Identification of protein-protein interfaces by decreased amide proton solvent accessibility.<\/a> Proceedings of the National Academy of Sciences of the United States of America, 1998 Dec 8, 95(25):14705-10.<\/p>\n

Mandell, JG; Falick, AM; Komives, EA. Measurement of amide hydrogen exchange by MALDI-TOF mass spectrometry.<\/a> Analytical Chemistry, 1998 Oct 1, 70(19):3987-95.<\/p>\n","protected":false},"excerpt":{"rendered":"

Mass Spectrometry Engen JR and Komives EA, (2020) Complementarity of Hydrogen\/Deuterium Exchange Mass Spectrometry and Cryo-Electron Microscopy. Trends Biochem Sci. S0968-0004(20)30125-0. Kopcho N, Chang G, Komives EA. (2019) Dynamics of ABC Transporter P-glycoprotein in Three Conformational States. Sci Rep. 9(1):15092. Lumpkin RJ, Komives EA. (2019) DECA, A Comprehensive, Automatic Post-processing Program for HDX-MS Data. Mol Cell Proteomics. 18, 2516-2523. Lumpkin<\/p>\n

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